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Yang Zhou# , Xiaoyu Zhan, Jiazheng Jin, Long Zhou, Juraj Bergman , Xuemei Li, Marjolaine Marie C. Rousselle, Meritxell Riera Belles, Lan Zhao, Miaoquan Fang, Jiawei Chen, Qi Fang , Lukas Kuderna ,Tomas Marques-Bonet , Haruka Kitayama , Takashi Hayakawa, Yong-Gang Yao , Huanming Yang, David N. Cooper , Xiaoguang Qi, Dong-Dong Wu , Mikkel Heide Schierup, Guojie Zhang *, Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution, 7, 1114-1130 (2023).
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Iker Rivas-González#, Marjolaine Rousselle#, Fang Li#, Long Zhou, Julien Y. Dutheil, Kasper Munch, Yong Shao, Dong-Dong Wu, Mikkel H. Schierup*, Guo-Jie Zhang*, Pervasive incomplete lineage sorting illuminates speciation and selection in primates. Science, 380,eabn4409 (2023).
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Xiao-Lin Zhuang#, Jin-Jin Zhang#, Yong Shao#, Yaxin Ye#, Chun-Yan Chen#, Long Zhou#, Zheng-bo Wang#, Xin Luo, Bing Su, Yong-Gang Yao, David N. Cooper, Ben-Xia Hu, Lu Wang, Xiao-Guang Qi, Jiang-Wei Lin, Guo-Jie Zhang*, Wen Wang*, Nengyin Sheng*, Dong-Dong Wu*, Integrative Omics Reveals Rapidly Evolving Regulatory Sequences Driving Primate Brain Evolution. Molecular biology and evolution, 40:8(2023).
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Yong Shao#, Long Zhou#, Fang Li, Lan Zhao, Bao-Lin Zhang, Feng Shao, Jia-Wei Chen, Chun-Yan Chen, Xupeng Bi, Xiao-Lin Zhuang, Hong-Liang Zhu, Jiang Hu, Zong-Yi Sun, Xin Li, De-Peng Wang, Iker Rivas-González, Sheng Wang, Yun-Mei Wang, Wu Chen, Gang Li, Hui-Meng Lu, Yang Liu, Lukas F. K. Kuderna, Kyle Kai-How Farh, Peng-Fei Fan, LiYu, Ming Li, Zhi-Jin Liu, George P. Tiley, Anne D. Yoder, Christian Roos, Takashi Hayakawa, Tomas Marques-Bonet, Jeffrey Rogers, Peter D. Stenson, David N. Cooper, Mikkel Heide Schierup, Yong-Gang Yao, Ya-Ping Zhang, Wen Wang, Xiao-Guang Qi*, Guo-Jie Zhang*, Dong-Dong Wu*, Phylogenomic analyses provide insights into primate evolution. Science, 380,913-924 (2023).
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Xiao-Guang Qi*#, Jin-Wei Wu#, Lan Zhao#, Lu Wang, Xuan-Min Guang, Paul A. Garber, Christopher Opie, Yuan Yuan, Run-Jie Diao, Gang Li, Kun Wang, Ru-Liang Pan, Wei-Hong Ji, Hai-Lu Sun, Zhi-Pang Huang, Chun-Zhong Xu, Arief B. Witarto, Rui Jia, Chi Zhang, Cheng Deng, Qiang Qiu, Guo-Jie Zhang, Cyril C. Grueter*, Dong-Dong Wu*, Baoguo Li*, Adaptations to a cold climate promoted social evolution in Asian colobine primates. Science, 380, eabl8621 (2023).
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Bao-Lin Zhang#, Wu Chen#, Zefu Wang#, Wei Pang, Meng-Ting Luo, Sheng Wang,Yong Shao, Wen-Qiang He, Yuan Deng, Long Zhou, Jiawei Chen, Min-Min Yang,Ya-JiangWu, Lu Wang, Hugo Fernández-Bellon, Sandra Molloy, Hélène Meunier, Fanélie Wanert, Lukas Kuderna, Tomas Marques-Bonet, Christian Roos, Xiao-Guang Qi, Ming Li, Zhi-Jin Liu, Mikkel Heide Schierup, David N. Cooper, Jian-Quan Liu, Yong-Tang Zheng*, Guo-Jie Zhang*, Dong-Dong Wu*, Comparative genomics reveals the hybrid origin of a macaque group. Science Advances, 9, eadd3580 (2023).
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Xu-Peng Bi#,Long Zhou#,Jin-Jin Zhang#,Shao-Hong Feng, Mei Hu, David N. Cooper, Jiang-Wei Lin, Jia-Li Li, Dong-Dong Wu*, Guo-Jie Zhang*, Lineage-specific accelerated sequences underlying primate evolution. Science Advances, 9, eadc9507 (2023).
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Wei Pang#, Yong Shao#, Xiao-Lin Zhuang#, Ying Lu#,Wen-Qiang He#,Hong-Yi Zheng, Rong Xin, Ming-Xu Zhang, Xiao-Liang Zhang, Jia-Hao Song, Ren-Rong Tian, Fan Shen ,Yi-Hui Li, Zu-Jiang Zhao, Dong-Dong Wu*, Yong-Tang Zheng*, Genomic Evidence for the Nonpathogenic State in HIV-1-Infected Northern Pig-Tailed Macaques. Molecular biology and evolution, 40:5(2023).
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Ming-Li Li#, Sheng Wanga#, Penghui Xuc#, Hang-Yu Tiana#, Mixue Baic,Ya-Ping Zhang , Yong Shao , Zi-Jun Xiong , Xiao-Guang Qi , David N. Cooper , Guojie Zhang, He Helen Zhu, Dong-Dong Wu*, Functional genomics analysis reveals the evolutionary adaptation and demographic history of slow lorises. PNAS,119(40):e2123030119,(2022).
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Yun-Mei Wang#, Saber Khederzadeh#, Shi-Rong Li, Newton Otieno Otecko, David M. Irwin, Mukesh Thakur, Xiao-Die Ren, Ming-Shan Wang*, Dong-Dong Wu*, Ya-Ping Zhang*, Integrating Genomic and Transcriptomic Data to Reveal Genetic Mechanisms Underlying Piao Chicken Rumpless Trait. Genomics Proteomics Bioinformatics, 19:787–799 (2021) .
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Yong Shao*#, Xiao-Bo Wang#, Mei-Ling Zhang#, Yan Liu#, Sheng Wang, Bao-Lin Zhang, Min-Min Yang, Ming-Hai Yang, Ting Jia, Tian-Chun Pu, Yan Lu, He Liu, Zhe Xu, Bo Li, Ning Liu, Violet Magoma Onsongo, Dong-Dong Wu, Cheng-Lin Zhang*, Jue Ruan*, Yan Li*, Long-read genome sequencing provides molecular insights into scavenging and societal complexity in spotted hyena Crocuta crocuta. Molecular Biology and Evolution, 39:3(2022).
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Dong-Dong Wu*, Xiao-Guang Qi, Li Yu, Ming Li, Zhi-Jin Liu, Anne D. Yoder, Christian Roos, Takashi Hayakawa, Jeffrey Rogers, Tomas Marques-Bonet, Bing Su, Yong-Gang Yao, Ya-Ping Zhang, Guojie Zhang*. Initiation of the Primate Genome Project. Zoological Research, 2022, 43(2): 147-149. doi: 10.24272/j.issn.2095-8137.2022.001
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Yan Li*, Dong-Dong Wu, Finding unknown species in the genomes of extant species. Journal of Genetics and Genomics, 48:867−871(2021).
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Lin Zeng#, He-Qun Liu#, Xiao-Long Tu#, Chang-Mian Ji#, Xiao Gou#, Ali Esmailizadeh, Sheng Wang, MingShan Wang, Ming-Cheng Wang, Xiao-Long Li, Hadi Charati, Adeniyi C. Adeola, Rahamon Akinyele Moshood Adedokun, Olatunbosun Oladipo, Sunday Charles Olaogun, Oscar J. Sanke, Mangbon Godwin F, Sheila Cecily Ommeh, Bernard Agwanda, Jacqueline Kasiiti Lichoti, Jian-Lin Han, Hong-Kun Zheng, Chang-Fa Wang*, Ya-Ping Zhang*, Laurent A. F. Frantz*, Dong-Dong Wu*, Genomes reveal selective sweeps in kiang and donkey for high-altitude adaptation. Zoological Research, 42(4): 450−460(2021).
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Ming-Shan Wang#, Jin-Jin Zhang#, Xing Guo#, Ming Li#, Rachel Meyer#, Hidayat Ashari#, Zhu-Qing Zheng, Sheng Wang, Min-Sheng Peng, Yu Jiang, Mukesh Thakur, Chatmongkon Suwannapoom, Ali Esmailizadeh, Nalini Yasoda Hirimuthugoda, Moch Syamsul Arifin Zein, Szilvia Kusza, Hamed Kharrati-Koopaee, Lin Zeng, Yun-Mei Wang, Ting-Ting Yin, Min-Min Yang, Ming-Li Li, Xue-Mei Lu, Emiliano Lasagna, Simone Ceccobelli, Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasig, Shao-Hong Feng, Hao Zhang, Abul Kashem Fazlul Haque Bhuiyan, Muhammad Sajjad Khan, Gamamada Liyanage Lalanie Pradeepa Silva, Le Thi Thuy, Okeyo A. Mwai, Mohamed Nawaz Mohamed Ibrahim, Guojie Zhang, Kai-Xing Qu, Olivier Hanotte, Beth Shapiro, Mirte Bosse*, Dong-Dong Wu*, Jian-Lin Han*, Ya-Ping Zhang*, Large-scale genomic analysis reveals the genetic cost of chicken domestication. BMC Biology, 19:118(2021) .
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Dong Liang#, Peng-ju Zhao#, Jing-fang Si, Ling-zhao Fang, Erola Pairo-Castineira, Xiao-xiang Hu, Qing Xu, Ya-li Hou, Yu Gong, Zheng-wen Liang, Bing Tian, Hua-ming Mao, Marnoch Yindee, Md Omar Faruque, Siton Kongvongxay, Souksamlane Khamphoumee, George E. Liu, Dong-Dong Wu, James Stuart F. Barker, Jianlin Han*, Yi Zhang, Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (Bubalus bubalis). Molecular Biology and Evolution, 38(3):1122–1136(2021) .
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Adeola Oluwakemi Ayoola#, Bao-Lin Zhang#*, Richard P Meisel, Lotanna M Nneji, Yong Shao, Olanrewaju B Morenikeji, Adeniyi C Adeola, Said I Ng’ang’a, Babafemi G Ogunjemite, Agboola O Okeyoyin, Christian Roos, Dong-Dong Wu*, Population Genomics Reveals Incipient Speciation, Introgression, and Adaptation in the African Mona Monkey (Cercopithecus mona). Molecular Biology and Evolution, 9;38(3):876–890,(2021).
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Ming-Shan Wang#, Mukesh Thakur, Min-Sheng Peng, Yu Jiang, Laurent Alain François Frantz, Ming Li ,Jin-Jin Zhang, Sheng Wang, Joris Peters, Newton Otieno Otecko, Chatmongkon Suwannapoom, Xing Guo, Zhu-Qing Zheng, Ali Esmailizadeh, Nalini Yasoda Hirimuthugoda, Hidayat Ashari, Sri Suladari, Moch Syamsul Arifin Zein, Szilvia Kusza, Saeed Sohrabi, Hamed Kharrati-Koopaee, Quan-Kuan Shen, Lin Zeng, Min-Min Yang, Ya-Jiang Wu, Xing-Yan Yang, Xue-Mei Lu, Xin-Zheng Jia, Qing-Hua Nie, Susan Joy Lamont, Emiliano Lasagna, Simone Ceccobelli, Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasige, Shao-Hong Feng, Jing-Fang Si, Hao Zhang, Jie-Qiong Jin, Ming-Li Li, Yan-Hu Liu, Hong-Man Chen, Cheng Ma, Shan-Shan Dai, Abul Kashem Fazlul Haque Bhuiyan, Muhammad Sajjad Khan, Gamamada Liyanage Lalanie Pradeepa Silva, Thi-Thuy Le, Okeyo Ally Mwai, Mohamed Nawaz Mohamed Ibrahim, Megan Suppl, Beth Shapiro, Olivier Hanotte, Guojie Zhang , Greger Larson, Jian-Lin Han, Dong-Dong Wu*, Ya-Ping Zhang*, 863 genomes reveal the origin and domestication of chicken. Cell Research, 0:1–9(2020) .
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Chang-Jun Peng#, Jin-Long Ren, Cao Deng, Dec-Hun Jiang, Jic-Hao Wang, Jiang-Yong Qu, Jiang Chang, Chao-Chao Yan, Ke Jiang, Robert W. Murphy, Dong-Dong Wu*, Jia-Tang Li*, The Genome of Shaw’s Sea Snake (Hydrophis curtus) Reveals Secondary Adaptation to Its Marine Environment. Molecular biology and evolution, 37(6):1744–1760,(2020).
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Yong Shao#, Xiao-Bo Wang, Jin-Jin Zhang, Ming-Li Li, Shou-Song Wu, Xi-Yao Ma, Xue Wang, Hui-Fang Zhao, Yuan Li, Helen He Zhu, David M. Irwin, De-Peng Wang, Guo-Jie Zhang*, Jue Ruan*, Dong-Dong Wu*, Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration. Nature Communications, 11:2656(2020).