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Ming-Shan Wang#, Sheng Wang#, Yan Li#, Yadvendradev Jhala#, Mukesh Thakur#, Newton O Otecko, Jing-Fang Si, Hong-Man Chen, Beth Shapiro*, Rasmus Nielsen*, Ya-Ping Zhang*, Dong-Dong Wu*, Ancient hybridization with an unknown population facilitated high altitude adaptation of canids. Molecular biology and evolution, 1;37(9):2616–2629(2020).
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Chang-Fa Wang #, Hai-Jing Li , Yu Guo, Jin-Ming Huang, Yan Sun, Jiu-Meng Min, Jin-Peng Wang, Xiao-Dong Fang, Zi-Cheng Zhao, Shuai Wang, Yan-Lin Zhang, QingFeng Liu, Qiang Jiang, Xiu-Ge Wang, Yi-Jun Guo, Chun-Hong Yang, Yin-Chao Wang, Fang Tian, Gui-Long Zhuang, Yan-Na Fan, Qican Gao, Yu-Hua Li, Zhi-Hua Ju, Jian-Bin Li, Rong-Ling Li, Ming-Hai Hou, Gui-Wen Yang, Gui-Qin Liu, Wen-Qiang Liu, Jiao Guo, Shan-Shan Pan, Guang-Yi Fan, Wei Zhang, Rui-Tao Zhang, Jie Yu, Xin-Hao Zhang, Qi Yin, Chuan-Liang Ji, Yuan-Chun Jin, Gui-Dong Yue, Mei Liu, Jia-Ke Xu , Shi-Min Liu, Jordi Jordana, Antonia Noce, Marcel Amills, Dong-Dong Wu*, Shuai-Cheng Li*, Xiang-Shan Zhou*, Ji-Feng Zhong*, Donkey genomes provide new insights into domestication and selection for coat color. Nature Communications, 11:6014 (2020) .
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Dong-Dong Wu#, Cui-Ping Yang#, Ming-Shan Wang#, Kun-Zhe Dong#, Da-Wei Yan#, Zi-Qian Hao#, Song-Qing Fan, Shu-Zhou Chu, Qiu-Shuo Shen, Li-Ping Jiang,Yan Li, Lin Zeng, He-Qun Liu, Hai-Bing Xie, Yun-Fei Ma, Xiao-Yan Kong, Shu-Li Yang, Xin-Xing Dong,Ali EsmailizadehmKoshkoiyeh, David M Irwin, Xiao Xiao,Ming Li, Yang Dong, Wen Wang, Peng Shi, Hai-Peng Li ,Yue-Hui Ma*, Xiao Gou*, Yong-Bin Chen*, Ya-Ping Zhang*, Convergent genomic signatures of high altitude adaptation among domestic mammals. National Science Review, 7: 952–963(2020).
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Lin Zeng#, Xiao-Long Tu#, He Dai#, Feng-Ming Han#, Bing-She Lu, Ming-Shan Wang, Hojjat Asadollahpour Nanaei, Ali Tajabadipour, Mehdi Mansouri, Xiao-Long Li, Li-Li Ji, David M. Irwin, Hong Zhou, Min Liu, Hong-Kun Zheng, Ali Esmailizadeh*, Dong-Dong Wu*, Whole genomes and transcriptomes reveal adaptation and domestication of pistachio. Genome Biology, 20:79(2019) .
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Yong Shao#, Hang-Yu Tian#, Jing-Jing Zhang#, Hamed Kharrati-Koopaee#, Xing Guo, Xiao-Lin Zhuang, Ming-Li Li, Hojat Asadollahpour Nanaie, Elahe Dehghani Tafti, Bahador Shojaei, Mohammad Reza Namavar, Narges Sotoudeh, Adeola Oluwakemi Ayoola, Jia-Li Li, Bin Liang*, Ali Esmailizadeh*, Shu Wang*, Dong-Dong Wu*, Genomic and Phenotypic Analyses Reveal Mechanisms Underlying Homing Ability in Pigeon. Molecular Biology and Evolution, 37(1),134–148(2020).
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Ming-Li Li#, Shi-Hao Wu#, Jin-Jin Zhang, Hang-Yu Tian, Yong Shao, Zheng-Bo Wang, David M. Irwin, Jia-Li Li, Xin-Tian Hu*, Dong-Dong Wu*, 547 transcriptomes from 44 brain areas reveal features of the aging brain in non-human primates. Genome biology, 20:258 (2019).
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Yu-lin Shi, Song-qing Fan, Meng-ge Wu, Zhi-xiang Zuo, Xing-yang Li, Li-ping Jiang, Qiu-shuo Shen, Pei-fang Xu, Lin Zeng, Yong-chun Zhou, Yun-chao Huang, Zuo-zhang Yang, Ju-min Zhou, Jing Gao, Hu Zhou, Shu-hua Xu, Hong-bin Ji, Peng Shi, Dong-Dong Wu*, Cuiping Yang*, Yongbin Chen*, YTHDF1 links hypoxia adaptation and non-small cell lung cancer progression. Nature Communications, 10:4892(2019).
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Dong-Dong Wu*, Xiang-Dong Ding, Sheng Wang, Jan M.Wójcik, Yi Zhang, Małgorzata Tokarska, Yan Li, Ming-Shan Wang, Omar Faruque, Rasmus Nielsen*, Qin Zhang*, Ya-Ping Zhang*, Pervasive introgression facilitated domestication and adaptation in the Bos species complex. Nature ecology & evolution, 2(7):1139–1145 (2018).
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Xing Guo#, Yan-Qing Li, Ming-Shan Wang, Zhi-Bin Wang, Quan Zhang, Yong Shao, Run-Shen Jiang, Sheng Wang, Chen-Dong Ma, Murphy Robert W, Guang-Qin Wang, Jing Dong, Li Zhang, Dong-Dong Wu*, Bing-Wang Du*, Min-Sheng Peng*, Ya-Ping Zhang*, A parallel mechanism underlying frizzle in domestic chickens. Journal of molecular cell biology, 10(6):589–591(2018).
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Hai-Bo Xu#, Yong-Xin Li#, Yan Li, Newton O Otecko, Ya-Ping Zhang, Bingyu Mao, Dong-Dong Wu*, Origin of new genes after zygotic genome activation in vertebrate. Journal of molecular cell biology, 10(2),139–146(2018).
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Ming-Shan Wang#, Newton O. Otecko#, Sheng Wang#, Dong-Dong Wu#, Min-Min Yang, Yi-Long Xu, Robert W. Murphy, Min-Sheng Peng*, Ya-Ping Zhang*, An Evolutionary Genomic Perspective on the Breeding of Dwarf Chickens. Molecular biology and evolution, 34(12):3081–3088(2017).
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Lin Zeng#, Chen Ming, Yan Li, Ling-Yan Su, Yan-Hua Su, Newton O. Otecko, He-Qun Liu,Ming-Shan Wang, Yong-Gang Yao, Hai-Peng Li, Dong-Dong Wu*, Ya-Ping Zhang*,Rapid Evolution of Genes Involved in Learning and Energy Metabolism for Domestication of the Laboratory Rat. Molecular biology and evolution, 34(12):3148–3153(2017).
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Lin Zeng#, Chen Ming#, Yan Li,Ling-Yan Su, Yan-Hua Su, Newton O. Otecko, Ambroise Dalecky, Stephen Donnellan, Ken Aplin, Xiao-Hui Liu, Ying Song, Zhi-Bin Zhang, Ali Esmailizadeh, Saeed S. Sohrabi, Hojjat Asadollahpour Nanaei, He-Qun Liu, Ming-Shan Wang, Solimane Ag Atteynine, Ge´rard Rocamora, Fabrice Brescia, Serge Morand, David M. Irwin, Ming-Sheng Peng, Yong-Gang Yao, Hai-Peng Li*, Dong-Dong Wu*, Ya-Ping Zhang*, Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing. Molecular biology and evolution, 35(1):149–158(2017).
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Ming-Shan Wang#, Yan Zeng#, Xiao Wang#, Wen-Hui Nie, Jin-Huan Wang, Wei-Ting Su, Newton O. Otecko, Zi-Jun Xiong, Sheng Wang, Kai-Xing Qu, Shou-Qing Yan, Min-Min Yang, Wen Wang, Yang Dong*, Dong-Dong Wu*, Ya-Ping Zhang*, Draft genome of the gayal, Bos frontalis. Giga Science, 6:1–7(2017)
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Ling-Qun Ye#, Hui Zhao#, He-Jiang Zhou#, Xiao-Die Ren#, Lin-Lin Liu#, Newton O. Otecko, Zheng-bo Wang, Min-Min Yang, Lin Zeng, Xin-Tian Hu, Yong-Gang Yao, Ya-Ping Zhang*, Dong-Dong Wu*, The RNA editome of Macaca mulatta and functional characterization of RNA editing in mitochondria. Science Bulletin, 62:820–830 (2017).
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Yun-Mei Wang#, Hai-Bo Xu, Ming-Shan Wang, Newton Otieno Otecko, Ling-Qun Ye, Dong-Dong Wu*, Ya-Ping Zhang*, Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication. BMC Evolutionary Biology,17:192 (2017) .
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Mukesh Thakur*, Ruheena Javed, Ved Prakash Kumar, Malay Shukla, Neha Singh, Aishwarya Maheshwari, Nipun Mohan, Dong-Dong Wu, Ya-Ping Zhang, DNA forensics in combating food frauds: a study from China in identifying canned meat labelled as deer origin. Current Science, 12/2449–2452(2017).
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Ming-Shan Wang#, He-Chuan Yang, Newton O Otecko, Dong-Dong Wu*, Ya-Ping Zhang*, Olfactory genes in Tibetan wild boar. Nature Genetics, 48(9):972–973 (2016).
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Yan Li#, Ming-Shan Wang#, Newton O Otecko#, Wen Wang, Peng Shi, Dong-Dong Wu*, Ya-Ping Zhang*, Hypoxia Potentially Promotes Tibetan Longevity. Cell Research, 8:1–4(2016).
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Ming-Shan Wang#, Yong-Xia Huo#, Yan Li, Newton O. Otecko, Ling-Yan Su, Hai-Bo Xu, Shi-Fang Wu, Min-Sheng Peng, He-Qun Liu, Lin Zeng, David M. Irwin, Yong-Gang Yao, Dong-Dong Wu*, and Ya-Ping Zhang*, Comparative population genomics reveal genetic basis underlying body size of domestic chickens. Journal of Molecular Cell Biology, 8(6), 542–552(2016).